PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011906
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 177aa    MW: 19806.4 Da    PI: 5.8172
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011906genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.64.3e-1973170197
       DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                  +Ca C   rr +C+++C++  yfp ++ ++f+ ++++FG + v  ++++l  +e+   a+++l   A+a++r+Pv G +g++++lq+q++ l+  +  
  Lus10011906  73 RCAKCHWSRRpNCPAGCPYYDYFPPNS-EAFNKIRRVFGGKFVETIYQKLrYPEDAFVAFRALERDADAWIRNPVMGPTGTVTELQHQIQFLQDRIRI 169
                  6***********************987.99********************55666999**********************************998876 PP

       DUF260  97 l 97 
                  l
  Lus10011906 170 L 170
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.74472174IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-1773169IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVTSFTDEVP IPLVNGRVEV PVPPKSSGID EGSISMTMEV SREMTEDYGS CRATGCSAVW  60
NNANDVEKVG NARCAKCHWS RRPNCPAGCP YYDYFPPNSE AFNKIRRVFG GKFVETIYQK  120
LRYPEDAFVA FRALERDADA WIRNPVMGPT GTVTELQHQI QFLQDRIRIL EGQPPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-12LBD family protein